Stem-loop aly-MIR399a

Accession

MI0014588

Description

Arabidopsis lyrata aly-MIR399a precursor miRNA

Sequence

caugugagauggaucaaagguggaaauguauuacaGGGUAAGAUCUCUAUUGGCAGGaaaccauuacuuagaucuuugcaucucuuuaugcauugcuuuuaagugaguucucUGCCAAAGGAGAUUUGCCCGGuaauucuucugcaccaauauauugauaug
(((((..((((.......((((.(...(.(((((.(((((.(((((((.((((((((.(((..(((((((((.(..(((((......)))))..)..)))))))))))).)))))))).)))))))))))).))))).)...).))))....)))).)))))

Structure

     ga    gaucaaa    g aau u     a     A       A        a   ca         -u uu     cu 
caugu  gaug       ggug a   g auuac GGGUA GAUCUCU UUGGCAGG aac  uuacuuaga  c  ugcau  c
|||||  ||||       |||| |   | ||||| ||||| ||||||| |||||||| |||  |||||||||  |  |||||   
guaua  uuau       ccac u   c uaauG CCCGU UUAGAGG AACCGUcu uug  agugaauuu  g  acgua  u
     -g    ---auaa    g cuu u     G     -       A        c   --         uc uu     uu 

Annotation confidence Not enough data

Genome context

GL348713.1: 12890901-12891062 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from aly-MIR399a

Mature aly-miR399a-5p

• Accession: MIMAT0017571
• Description: Arabidopsis lyrata aly-miR399a-5p mature miRNA
• Sequence: 36 - GGGUAAGAUCUCUAUUGGCAGG - 57
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR399a-3p

• Accession: MIMAT0017572
• Description: Arabidopsis lyrata aly-miR399a-3p mature miRNA
• Sequence: 113 - UGCCAAAGGAGAUUUGCCCGG - 133
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103