Accession
MI0014588
Description
Arabidopsis lyrata
aly-MIR399a precursor miRNA
Sequence
caugugagauggaucaaagguggaaauguauuacaGGGUAAGAUCUCUAUUGGCAGGaaaccauuacuuagaucuuugcaucucuuuaugcauugcuuuuaagugaguucucUGCCAAAGGAGAUUUGCCCGGuaauucuucugcaccaauauauugauaug
(((((..((((.......((((.(...(.(((((.(((((.(((((((.((((((((.(((..(((((((((.(..(((((......)))))..)..)))))))))))).)))))))).)))))))))))).))))).)...).))))....)))).)))))
(((((..((((.......((((.(...(.(((((.(((((.(((((((.((((((((.(((..(((((((((.(..(((((......)))))..)..)))))))))))).)))))))).)))))))))))).))))).)...).))))....)))).)))))
Structure
ga gaucaaa g aau u a A A a ca -u uu cu
caugu gaug ggug a g auuac GGGUA GAUCUCU UUGGCAGG aac uuacuuaga c ugcau c
||||| |||| |||| | | ||||| ||||| ||||||| |||||||| ||| ||||||||| | |||||
guaua uuau ccac u c uaauG CCCGU UUAGAGG AACCGUcu uug agugaauuu g acgua u
-g ---auaa g cuu u G - A c -- uc uu uu
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348713.1: 12890901-12891062 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from aly-MIR399a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR399a-5p
| Accession | MIMAT0017571 |
| Description | Arabidopsis lyrata aly-miR399a-5p mature miRNA |
| Sequence | 36 - GGGUAAGAUCUCUAUUGGCAGG - 57 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR399a-3p
| Accession | MIMAT0017572 |
| Description | Arabidopsis lyrata aly-miR399a-3p mature miRNA |
| Sequence | 113 - UGCCAAAGGAGAUUUGCCCGG - 133 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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