Stem-loop aly-MIR171a

Accession

MI0014560

Description

Arabidopsis lyrata aly-MIR171a precursor miRNA

Sequence

64 reads, 2232 reads per million, 1 experiments

ucguuuuuuauauuguuuuccuuugaucuaucacuuaagcacgagagagucccuuugaUAUUGGCCUGGUUCACUCAGAucuucccugaccacacucacgucguacauaugcauucucucuagauuaucUGAUUGAGCCGCGCCAAUAUCucaguacucucucgucucuauuuuggacuuugugaucuuguaaaucga
(((...((((((..(((.......(.((((.......((.((((((((((..((..(((((((((.(((((((.((((((..((...(((.........)))(((....)))..........))..)))))).))))))).)))))))))..)).))))))))))))......))))).....)))..)))))).)))

Structure

   uuu      uu   uuccuuu a    ucacuua  c          cc  uu         C       C      cu  -----------------ccu   cac 
ucg   uuuaua  guu       g ucua       ag acgagagagu  cu  gaUAUUGGC UGGUUCA UCAGAu  uc                    gac   a
|||   ||||||  |||       | ||||       || ||||||||||  ||  ||||||||| ||||||| ||||||  ||                    |||   c
agc   aaaugu  uag       c aggu       uc ugcucucuca  ga  CUAUAACCG GCCGAGU AGUcua  ag                    cug   u
   --u      uc   --uguuu -    -uuuauc  -          -u  cu         C       U      uu  aucucucuuacguauacaug   cac 

Annotation confidence Not enough data

Genome context

GL348717.1: 15611064-15611261 [+]

Mature aly-miR171a-5p

• Accession: MIMAT0017515
• Description: Arabidopsis lyrata aly-miR171a-5p mature miRNA
• Sequence: 59 - UAUUGGCCUGGUUCACUCAGA - 79
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR171a-3p

• Accession: MIMAT0017516
• Description: Arabidopsis lyrata aly-miR171a-3p mature miRNA
• Sequence: 130 - UGAUUGAGCCGCGCCAAUAUC - 150
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103