Stem-loop aly-MIR4248b

Accession

MI0015811

Description

Arabidopsis lyrata aly-MIR4248b precursor miRNA

Sequence

1746 reads, 194.0 reads per million, 11 experiments

uguggugauauucaaaauauACAUUUUAUUUUUGGCAAUCAuuuuucuuuuauaaauucaaaagucauuuuucuuucuaaaaacacaauaauauauauauauauauauaaccaacguuugaguuuuaaaaaagaaaaaugaauuuauaagaaAAUGAUUGCCAAAAAGAAAauguauauuuuguuauauuaccauaa
(((((((((((.(((((((((((((((.((((((((((((((((((...((((((((.......((((((((((((...(((((.(((...(((((((....)))))))........))).)))))...)))))))))))))))))))))))))))))))))))))).)))))))))))))))..))))))))))).

Structure

-           -u               A                  cuu        ucaaaag            cua     a   -----uaa       a 
 uguggugauau  caaaauauACAUUUU UUUUUGGCAAUCAuuuuu   uuauaaau       ucauuuuucuuu   aaaac caa        uauauau u
 |||||||||||  ||||||||||||||| ||||||||||||||||||   ||||||||       ||||||||||||   ||||| |||        |||||||  
 auaccauuaua  guuuuauauguaAAA AAAAACCGUUAGUAAaag   aauauuua       aguaaaaagaaa   uuuug guu        auauaua a
a           uu               G                  ---        -------            aaa     a   ugcaacca       u 

Annotation confidence Low

Genome context

GL348719.1: 1283584-1283780 [-]

Mature aly-miR4248b-5p

• Accession: MIMAT0017938
• Description: Arabidopsis lyrata aly-miR4248b-5p mature miRNA
• Sequence: 21 - ACAUUUUAUUUUUGGCAAUCA - 41
• Evidence: experimental ; SOLiD [1]

Mature aly-miR4248b-3p

• Accession: MIMAT0057411
• Description: Arabidopsis lyrata aly-miR4248b-3p mature miRNA
• Sequence: 153 - AAUGAUUGCCAAAAAGAAA - 171
• Evidence: experimental ; unknown

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103