miRBase entry: aly-MIR1887

Stem-loop aly-MIR1887


Accession
MI0015781
Description
Arabidopsis lyrata aly-MIR1887 precursor miRNA


Sequence

1341 reads, 706.0 reads per million, 4 experiments
uuguuCACUUAGAUUGUUCUUAGUAUGAGuuguucuCGUACUAAGUAGAGUCUAagagaacaa
.(((((.((((((((.(.(((((((((((.....))))))))))).).)))))))).))))).

Structure
u     A        G U           u 
 uguuC CUUAGAUU U CUUAGUAUGAG u
 ||||| |||||||| | ||||||||||| g
 acaag gaAUCUGA A GAAUCAUGCuc u
a     a        G U           u 


Annotation confidence Medium
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Genome context
GL348719.1: 9352612-9352674 [-]

Database links

Mature aly-miR1887-5p

Accession MIMAT0017908
Description Arabidopsis lyrata aly-miR1887-5p mature miRNA
Sequence 6 - CACUUAGAUUGUUCUUAGUAUGAG - 29
Evidence experimental
SOLiD [1]

Mature aly-miR1887-3p

Accession MIMAT0057390
Description Arabidopsis lyrata aly-miR1887-3p mature miRNA
Sequence 37 - CGUACUAAGUAGAGUCUA - 54
Evidence experimental
unknown

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103