Stem-loop aly-MIR171c

Accession

MI0014562

Description

Arabidopsis lyrata aly-MIR171c precursor miRNA

Sequence

59 reads, 2057 reads per million, 1 experiments

ggacaucgaauacgAGAUAUUGGUGCGGUUCAAUCagaaaacuguacucuuuuguuuuaaagaucgguuuguuugaUUGAGCCGUGCCAAUAUCACGuguuuaaauaguuu
.......(((((((.(((((((((((((((((((((((((((((...(((((......))))).)))))).))))))))))))))))))))))).))))))).........

Structure

--ggacauc       A                       -      uac     ug 
         gaauacg GAUAUUGGUGCGGUUCAAUCaga aaacug   ucuuu  u
         ||||||| ||||||||||||||||||||||| ||||||   |||||   
         uuuguGC CUAUAACCGUGCCGAGUUaguuu uuuggc   agaaa  u
uuugauaaa       A                       g      --u     uu 

Annotation confidence Medium

Genome context

GL348714.1: 1951192-1951302 [+]

Mature aly-miR171c-5p

• Accession: MIMAT0017519
• Description: Arabidopsis lyrata aly-miR171c-5p mature miRNA
• Sequence: 15 - AGAUAUUGGUGCGGUUCAAUC - 35
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR171c-3p

• Accession: MIMAT0017520
• Description: Arabidopsis lyrata aly-miR171c-3p mature miRNA
• Sequence: 77 - UUGAGCCGUGCCAAUAUCACG - 97
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103