Stem-loop aly-MIR156e

Accession

MI0014506

Description

Arabidopsis lyrata aly-MIR156e precursor miRNA

Sequence

152 reads, 5300 reads per million, 1 experiments

guagagugugaaagguaagaggaggUGACAGAAGAGAGUGAGCACacauggugguuucuugcaugcuuuuuuuuaauuagggcuucaugcuugaagcuauguguGCUUACUCUCUCUCUGUCACCccuucucucucucuuuucaaauuac
....(((.(((((((..(((((((((((((((((((((((((((((((((((...(((..(((((((((.........)))))...))))..))))))))))))))))))))))).)))))))))...)).))))..))))))).)))..

Structure

guag   g       ua    -  ---         -                    ggu   uu    ---     uuu 
    agu ugaaagg  agag ga   ggUGACAGA AGAGAGUGAGCACacauggu   uuc  gcau   gcuuu   u
    ||| |||||||  |||| ||   ||||||||| ||||||||||||||||||||   |||  ||||   |||||   u
    uua acuuuuc  ucuc cu   CCACUGUCU UCUCUCAUUCGuguguaucg   aag  cgua   cggga   a
--ca   a       uc    u  ucc         C                    ---   uu    cuu     uua 

Annotation confidence Not enough data

Genome context

GL348718.1: 4871349-4871498 [+]

Mature aly-miR156e-5p

• Accession: MIMAT0017405
• Description: Arabidopsis lyrata aly-miR156e-5p mature miRNA
• Sequence: 26 - UGACAGAAGAGAGUGAGCAC - 45
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR156e-3p

• Accession: MIMAT0017406
• Description: Arabidopsis lyrata aly-miR156e-3p mature miRNA
• Sequence: 105 - GCUUACUCUCUCUCUGUCACC - 125
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103