Stem-loop ath-MIR4239

Accession

MI0015819

Description

Arabidopsis thaliana ath-MIR4239 precursor miRNA

Literature search

1 open access papers mention ath-MIR4239
(2 sentences)

Sequence

663 reads, 5.0 reads per million, 111 experiments

ucuuguuugcacauuuugucUUUGUUAUUUUCGCAUGCUCCuuugaaacuuuuugugcauggaugugaaacucuucacuggagcAUACGGCGAUAACGAAAACAAGGUgugcauauaaacuuu
..((((.((((((((((((.(((((((((.(((.(((((((..((((...((((..(((....)))))))...))))..))))))).))).))))))))).)))))))))))).)))).....

Structure

---uc    u            c         U   C       uu    acu    gu   u 
     uugu ugcacauuuugu UUUGUUAUU UCG AUGCUCC  ugaa   uuuu  gca g
     |||| |||||||||||| ||||||||| ||| |||||||  ||||   ||||  |||  
     aaua acgugUGGAACA AAGCAAUAG GGC UAcgagg  acuu   aaag  ugu g
uuuca    u            A         C   A       uc    cuc    --   a 

Annotation confidence Medium

Genome context

chr4: 11368752-11368874 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR4239

Mature ath-miR4239-5p

• Accession: MIMAT0017947
• Description: Arabidopsis thaliana ath-miR4239-5p mature miRNA
• Sequence: 21 - UUUGUUAUUUUCGCAUGCUCC - 41
• Evidence: experimental ; SOLiD [1]

Mature ath-miR4239-3p

• Accession: MIMAT0053897
• Description: Arabidopsis thaliana ath-miR4239-3p mature miRNA
• Sequence: 85 - AUACGGCGAUAACGAAAACAAGGU - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103