Stem-loop ath-MIR4239

Accession

MI0015819

Description

Arabidopsis thaliana ath-MIR4239 precursor miRNA

Sequence

ucuuguuugcacauuuugucUUUGUUAUUUUCGCAUGCUCCuuugaaacuuuuugugcauggaugugaaacucuucacuggagcauacggcgauaacgaaaacaaggugugcauauaaacuuu
..((((.((((((((((((.(((((((((.(((.(((((((..((((...((((..(((....)))))))...))))..))))))).))).))))))))).)))))))))))).)))).....

Structure

---uc    u            c         U   C       uu    acu    gu   u 
     uugu ugcacauuuugu UUUGUUAUU UCG AUGCUCC  ugaa   uuuu  gca g
     |||| |||||||||||| ||||||||| ||| |||||||  ||||   ||||  |||  
     aaua acguguggaaca aagcaauag ggc uacgagg  acuu   aaag  ugu g
uuuca    u            a         c   a       uc    cuc    --   a 

Annotation confidence Not enough data

Genome context

chr4: 11368752-11368874 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR4239

Mature ath-miR4239

• Accession: MIMAT0017947
• Description: Arabidopsis thaliana ath-miR4239 mature miRNA
• Sequence: 21 - UUUGUUAUUUUCGCAUGCUCC - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103