Stem-loop aly-MIR829

Accession

MI0014607

Description

Arabidopsis lyrata aly-MIR829 precursor miRNA

Sequence

7291 reads, 2618.0 reads per million, 12 experiments

ugauuaacaaaaacaaugaaucauucuaccaauugacuuguacuuugaaucuuugauuugaaCCUUUCAAAUGGUAUCAAAGCUUCuacaucuuugaAGCUCUGAUACCAUGUGAAggagucaaaucaaaucuucaagguacuagucaacuuggcagagaaaaaaauguaguugggauua
(((((..(((..(((........((((.((((((((((.((((((((((..((((((((((..((((((.(((((((((.((((((.........)))))).))))))))).))))))..))))))))))..)))))))))).)))))).)))).)))).......)))..))).)))))

Structure

     aa   aa   augaauca    a    -      u          uc          aC      A         A      uac 
ugauu  caa  aca        uucu ccaa uugacu guacuuugaa  uuugauuuga  CUUUCA AUGGUAUCA AGCUUC   a
|||||  |||  |||        |||| |||| |||||| ||||||||||  ||||||||||  |||||| ||||||||| ||||||   u
auuag  guu  ugu        gaga gguu aacuga cauggaacuu  aaacuaaacu  ggAAGU UACCAUAGU UCGAag   c
     -g   ga   -aaaaaaa    c    c      u          cu          ga      G         C      uuu 

Annotation confidence Medium

Genome context

GL348713.1: 15049338-15049517 [-]

Mature aly-miR829-5p

• Accession: MIMAT0017611
• Description: Arabidopsis lyrata aly-miR829-5p mature miRNA
• Sequence: 63 - CCUUUCAAAUGGUAUCAAAGCUUC - 86
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR829-3p

• Accession: MIMAT0017612
• Description: Arabidopsis lyrata aly-miR829-3p mature miRNA
• Sequence: 98 - AGCUCUGAUACCAUGUGAA - 116
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103