Stem-loop aly-MIR861

Accession

MI0014627

Description

Arabidopsis lyrata aly-MIR861 precursor miRNA

Sequence

aaugauguGUUUGGAGAAAUAUGCAUCAUggagucugucuucuugagaagcauuuuugagugagaauaauucucauaaauaauGAUGGAUAUAUCUUCAAGAACuucguu
(((((.((.((((((((.((((.((((((((((.....)))).((((((..((((((....))))))..))))))......)))))).)))).)))))))).)).)))))

Structure

     u  G        A    G      ggagucugucuucu      gc      g 
aauga gu UUUGGAGA AUAU CAUCAU              ugagaa  auuuuu a
||||| || |||||||| |||| ||||||              ||||||  ||||||  
uugcu CA GAACUUCU UAUA GUAGua              acucuu  uaagag g
     u  A        A    G      --------auaaau      aa      u 

Annotation confidence Not enough data

Genome context

GL348717.1: 13692799-13692908 [-]

Mature aly-miR861-5p

• Accession: MIMAT0017651
• Description: Arabidopsis lyrata aly-miR861-5p mature miRNA
• Sequence: 9 - GUUUGGAGAAAUAUGCAUCAU - 29
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR861-3p

• Accession: MIMAT0017652
• Description: Arabidopsis lyrata aly-miR861-3p mature miRNA
• Sequence: 84 - GAUGGAUAUAUCUUCAAGAAC - 104
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103