Stem-loop aly-MIR845a

Accession

MI0014617

Description

Arabidopsis lyrata aly-MIR845a precursor miRNA

Sequence

ucaauaguuccaucgcucgguuuccaucacgUCGAUUGGUGUCAGAGCCACGccuaugaaaaauuugcgCGGCUCUGAUACCAGUUGAUGcaauggaaacaucgauauugccuga
......((...((((....((((((((..((((((((((((((((((((.(((..((.....))..))).))))))))))))))))))))..))))))))..))))...))....

Structure

ucaaua  ucc    cucg        ca                    A   cu  g 
      gu   aucg    guuuccau  cgUCGAUUGGUGUCAGAGCC CGc  au a
      ||   ||||    ||||||||  |||||||||||||||||||| |||  || a
      cg   uagc    caaaggua  GUAGUUGACCAUAGUCUCGG gcg  ua a
--aguc  uua    --ua        ac                    C   uu  a 

Annotation confidence Low

Genome context

GL348719.1: 8114921-8115035 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR845a

Mature aly-miR845a-5p

• Accession: MIMAT0017631
• Description: Arabidopsis lyrata aly-miR845a-5p mature miRNA
• Sequence: 32 - UCGAUUGGUGUCAGAGCCACG - 52
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR845a-3p

• Accession: MIMAT0017632
• Description: Arabidopsis lyrata aly-miR845a-3p mature miRNA
• Sequence: 70 - CGGCUCUGAUACCAGUUGAUG - 90
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103