Stem-loop aly-MIR845b

Accession

MI0014618

Description

Arabidopsis lyrata aly-MIR845b precursor miRNA

Sequence

aguuccaucacuagguuuccaucacaUCAAUUGGUAUCAGAGCAACGcaugauguauaauaacuaagcgUCGCUCUGAUACCAAAUGAUGcaauguaaacauggauauugcu
...(((((......((((.(((..(((((.(((((((((((((.((((..................)))).))))))))))))).)))))..))).))))))))).......

Structure

----agu     cacuag    c   ca     A             A    augaugua 
       uccau      guuu cau  caUCA UUGGUAUCAGAGC ACGc        u
       |||||      |||| |||  ||||| ||||||||||||| ||||         
       aggua      caaa gua  GUAGU AACCAUAGUCUCG Ugcg        a
ucguuau     ------    u   ac     A             C    aaucaaua 

Annotation confidence Not enough data

Genome context

GL348719.1: 8118257-8118368 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR845b

Mature aly-miR845b-5p

• Accession: MIMAT0017633
• Description: Arabidopsis lyrata aly-miR845b-5p mature miRNA
• Sequence: 27 - UCAAUUGGUAUCAGAGCAACG - 47
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR845b-3p

• Accession: MIMAT0017634
• Description: Arabidopsis lyrata aly-miR845b-3p mature miRNA
• Sequence: 70 - UCGCUCUGAUACCAAAUGAUG - 90
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103