Accession
MI0014619
Description
Arabidopsis lyrata
aly-MIR846 precursor miRNA
Sequence
50
reads,
1743
reads per million, 1 experiments
uuuauuugaauuuuauguggauauuggcaguuugagauuaaccaucucaauaacaaacaucuugaauguguugagguugaucacgaugaugccacguccgguuucaUUCAGGGACUUCAAUUCAGAAccaacuucaugguuuuugaacuaauuggauaugauaaaugguaccaaguuuucacuugcauucaagggacauauaucauuggguuuuuacuuuuauggauauaugacuaugacauacacgauuagaagcuaaagguugcgggaggcaagcagugggauaaugaucugcaaguggaacuucuuacuuuuaucauaucccaucagcucgaaagucuugauguuaguuUUGAAUUGAAGUGCUUGAAUUagaccagaugaauagucaguagucacaacccucuacauauaugagaucuucaggcguugagaagauuaaucucaaaacuguaacagaaaaguuggugga
......(.((((((.(.((.......(((((((((((((((.(.(((((((..(....((((((.((((((.(((((((...((..((((....((((.(((((.(((((((.(((((((((((((((.(((.(((.(((((((((.((.((.((((((((((((.((((..((((((.((((((((.(((.((..((((((((..((((........))))..)))))))).)).))).......(((((....(((..(.((((.....)))).)..))).....)))))))))))))))))))..)))))))))))))))).)).)).))))))))).))).))).))))))))))))))).))))))).))))).))))....))))...))..))).)))).)))))).)))))).....)..))))))).).)))))))).)))))))..)).))))))).)....
......(.((((((.(.((.......(((((((((((((((.(.(((((((..(....((((((.((((((.(((((((...((..((((....((((.(((((.(((((((.(((((((((((((((.(((.(((.(((((((((.((.((.((((((((((((.((((..((((((.((((((((.(((.((..((((((((..((((........))))..)))))))).)).))).......(((((....(((..(.((((.....)))).)..))).....)))))))))))))))))))..)))))))))))))))).)).)).))))))))).))).))).))))))))))))))).))))))).))))).))))....))))...))..))).)))).)))))).)))))).....)..))))))).).)))))))).)))))))..)).))))))).)....
Structure
uuuauu g a g gauauug - c a aa -aaac a u - auc -ga gcca c c G c u u a a u u cc u ----------------------------------------------------u a ga au uuu
u aauuuu u ug gcaguuu gagauuaa c ucucaau c aucuug augugu gagg uug ac ugau cguc gguuu aUUCAGG ACUUCAAUUCAGAAc aac uca gguuuuuga cu au ggauaugauaaa ggua aaguuu cacuugca uca gg cauauauc uggg u
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g uugaaa a ac ugucaaa cucuaauu g agaguug g uagagu uauaca cucc aac ug acug guag ccaga UAAGUUC UGAAGUUAAGUUuug uug agu cugaaagcu ga ua ccuauacuauuu ucau uucaag gugaacgu agu uc guauauag auuu u
--aggu g - g -----aa a a a cg acuuc a u c -ac aug auaa a U G a u u c c c - uc - cuaguaauagggugacgaacggagggcguuggaaaucgaagauuagcacauac a -a gu uca
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348714.1: 2586985-2587456 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR846
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR846-5p
| Accession | MIMAT0017635 |
| Description | Arabidopsis lyrata aly-miR846-5p mature miRNA |
| Sequence | 107 - UUCAGGGACUUCAAUUCAGAA - 127 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR846-3p
| Accession | MIMAT0017636 |
| Description | Arabidopsis lyrata aly-miR846-3p mature miRNA |
| Sequence | 353 - UUGAAUUGAAGUGCUUGAAUU - 373 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
References
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