Stem-loop aly-MIR4248c

Accession

MI0015812

Description

Arabidopsis lyrata aly-MIR4248c precursor miRNA

Sequence

23 reads, 70 reads per million, 1 experiments

uguggugauauuaaaaauauACAUUUUAUUUUUGGCAAUCAuuuuucuuuuauaaauucaaaaaagaaaauguauauuuuguuauauauaaccaacguuugaguuuuaaaaaagauaaaugaauuuauaagaaaaugauugccaaaaagaaaauguauauuuuguuauauuaccaaaa
..(((((((((..((((((((((((((.((((((((((((((((((...(((((((((((.........(((((((......)))))))....(((......)))..............))))))))))))))))))))))))))))).))))))))))))))...)))))))))...

Structure

-ug         -ua              A                  cuu           ---------------------aaaaagaaa       uu 
   uggugauau   aaaauauACAUUUU UUUUUGGCAAUCAuuuuu   uuauaaauuca                              auguaua  u
   |||||||||   |||||||||||||| ||||||||||||||||||   |||||||||||                              |||||||   
   accauuaua   uuuuauauguaaaa aaaaaccguuaguaaaag   aauauuuaagu                              uauauau  u
aaa         uug              g                  ---           aaauagaaaaaauuuugaguuugcaaccaa       ug 

Annotation confidence Not enough data

Genome context

GL348720.1: 4235360-4235537 [-]

Mature aly-miR4248c

• Accession: MIMAT0017939
• Description: Arabidopsis lyrata aly-miR4248c mature miRNA
• Sequence: 21 - ACAUUUUAUUUUUGGCAAUCA - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103