Stem-loop aly-MIR156b

Accession

MI0014503

Description

Arabidopsis lyrata aly-MIR156b precursor miRNA

Sequence

176 reads, 6137 reads per million, 1 experiments

aacagagaaaacUGACAGAAGAGAGUGAGCACaugcaggcucuguuaugugucuauaacuuugcgugugcguGCUCACCUCUCUUUCUGUCAGUugcuuaucucuuguu
((((((((.(((((((((((((((((((((((.((((.((...((((((....))))))...)).)))).))))))).))))).))))))))))).....)))).))))

Structure

    -    ----a           -     -       a    g  ucu      u 
aaca gaga     aacUGACAGAA GAGAG UGAGCAC ugca gc   guuaug g
|||| ||||     ||||||||||| ||||| ||||||| |||| ||   ||||||  
uugu cucu     uUGACUGUCUU CUCUC ACUCGug gugu cg   caauau u
    u    auucg           U     C       c    g  uuu      c 

Annotation confidence Medium

Genome context

GL348719.1: 4534117-4534225 [-]

Mature aly-miR156b-5p

• Accession: MIMAT0017399
• Description: Arabidopsis lyrata aly-miR156b-5p mature miRNA
• Sequence: 13 - UGACAGAAGAGAGUGAGCAC - 32
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR156b-3p

• Accession: MIMAT0017400
• Description: Arabidopsis lyrata aly-miR156b-3p mature miRNA
• Sequence: 73 - GCUCACCUCUCUUUCUGUCAGU - 94
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103