miRBase entry: aly-MIR156b

Stem-loop aly-MIR156b


Accession
MI0014503
Description
Arabidopsis lyrata aly-MIR156b precursor miRNA


Sequence

176 reads, 6137 reads per million, 1 experiments
aacagagaaaacUGACAGAAGAGAGUGAGCACaugcaggcucuguuaugugucuauaacuuugcgugugcguGCUCACCUCUCUUUCUGUCAGUugcuuaucucuuguu
((((((((.(((((((((((((((((((((((.((((.((...((((((....))))))...)).)))).))))))).))))).))))))))))).....)))).))))

Structure
    -    ----a           -     -       a    g  ucu      u 
aaca gaga     aacUGACAGAA GAGAG UGAGCAC ugca gc   guuaug g
|||| ||||     ||||||||||| ||||| ||||||| |||| ||   ||||||  
uugu cucu     uUGACUGUCUU CUCUC ACUCGug gugu cg   caauau u
    u    auucg           U     C       c    g  uuu      c 


Annotation confidence High
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Genome context
GL348719.1: 4534117-4534225 [-]

Database links

Mature aly-miR156b-5p

Accession MIMAT0017399
Description Arabidopsis lyrata aly-miR156b-5p mature miRNA
Sequence 13 - UGACAGAAGAGAGUGAGCAC - 32
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR156b-3p

Accession MIMAT0017400
Description Arabidopsis lyrata aly-miR156b-3p mature miRNA
Sequence 73 - GCUCACCUCUCUUUCUGUCAGU - 94
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103