Stem-loop aly-MIR841

Accession

MI0015780

Description

Arabidopsis lyrata aly-MIR841 precursor miRNA

Sequence

gcaccaacucuaccaugugcagaaacuauggucuugaguugccugugaaUACGACCCACUGGAAACUAAAauaaacaaagaaacaguaucagugugaaauuucauaaaauuagaguacaaagagacaugaaauuucuuuguuuacuucaguuuuugaugggucguauucacaugcaacucaggaccagaguaucuacacauggucgacuuggug
.((((((.((.((((((((.(((.(((.((((((((((((((.(((((((((((((((.((((((((.((.((((((((((((((((.((..((((....(((.........)))))))..)).)).))...)))))))))))).)).)))))))).))))))))))))))).)))))))))))))).))).))).)))))))).)).))))))

Structure

g      c  u        c   a   a              c               C        A  a            ---  -  a  ag    aaau   aua 
 caccaa uc accaugug aga acu uggucuugaguugc ugugaaUACGACCCA UGGAAACU AA uaaacaaagaaa   ca gu uc  ugug    uuc   a
 |||||| || |||||||| ||| ||| |||||||||||||| ||||||||||||||| |||||||| || ||||||||||||   || || ||  ||||    |||   a
 gugguu ag ugguacac ucu uga accaggacucaacg acacuuaugcugggu guuuuuga uu auuuguuucuuu   gu ca ag  acau    gag   a
-      c  c        a   a   g              u               a        c  c            aaa  a  g  aa    ----   auu 

Annotation confidence Not enough data

Genome context

GL348719.1: 15200291-15200504 [-]

Mature aly-miR841

• Accession: MIMAT0017907
• Description: Arabidopsis lyrata aly-miR841 mature miRNA
• Sequence: 50 - UACGACCCACUGGAAACUAAA - 70
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103