Stem-loop aly-MIR156d

Accession

MI0014505

Description

Arabidopsis lyrata aly-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

230 reads, 8020 reads per million, 1 experiments

augggggaaaagaaguUGACAGAAGAGAGUGAGCACacaaaggggaaguuguauagaauuuuuguauaugguugcuuuugcguGCUCACUCUCUUUCUGUCAUAacuucuccuuucau
(((((((...((((((((((((((((((((((((((.((((((.((...((((((((...))))))))...)).)))))).)))))))))))).))))))))..)))))).)))))))

Structure

       aaa      --        -            a      g  agu        a 
auggggg   agaagu  UGACAGAA GAGAGUGAGCAC caaagg ga   uguauaga  
|||||||   ||||||  |||||||| |||||||||||| |||||| ||   |||||||| u
uacuuuc   ucuuca  ACUGUCUU CUCUCACUCGug guuuuc uu   auauguuu  
       --c      AU        U            c      g  ggu        u 

Annotation confidence High

Genome context

GL348718.1: 4353135-4353252 [-]

Mature aly-miR156d-5p

• Accession: MIMAT0017403
• Description: Arabidopsis lyrata aly-miR156d-5p mature miRNA
• Sequence: 17 - UGACAGAAGAGAGUGAGCAC - 36
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR156d-3p

• Accession: MIMAT0017404
• Description: Arabidopsis lyrata aly-miR156d-3p mature miRNA
• Sequence: 84 - GCUCACUCUCUUUCUGUCAUA - 104
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103