Stem-loop aly-MIR161

Accession

MI0014524

Description

Arabidopsis lyrata aly-MIR161 precursor miRNA

Literature search

2 open access papers mention aly-MIR161
(4 sentences)

Sequence

492697 reads, 12494.0 reads per million, 12 experiments

gaucaaugcaUUGAAAGUGACUACAUCGGGGUuuuguuuuuuuguugcucccacgaucgaaucgauaugaggaagaugaaaaauuaaucaacCCCGGUUUAGUCACUUUCACUgcauuaauc
(((.((((((.((((((((((((.((((((((((((.(((((((((..(((((..((((...)))).)).))).))))))))).)))..))))))))).)))))))))))).)))))).)))

Structure

   c      U            C         --   u         gc   -  cg    a 
gau aaugca UGAAAGUGACUA AUCGGGGUu  uug uuuuuuguu  ucc ca  aucg  
||| |||||| |||||||||||| |||||||||  ||| |||||||||  ||| ||  |||| a
cua uuacgU ACUUUCACUGAU UGGCCCcaa  aau aaaaaguag  agg gu  uagc  
   a      C            U         cu   u         -a   a  -a    u 

Annotation confidence High

Genome context

GL348713.1: 24491110-24491231 [+]

Mature aly-miR161-5p

• Accession: MIMAT0017442
• Description: Arabidopsis lyrata aly-miR161-5p mature miRNA
• Sequence: 11 - UUGAAAGUGACUACAUCGGGGU - 32
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR161-3p

• Accession: MIMAT0017443
• Description: Arabidopsis lyrata aly-miR161-3p mature miRNA
• Sequence: 93 - CCCGGUUUAGUCACUUUCACU - 113
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103