Stem-loop aly-MIR160b

Accession

MI0014522

Description

Arabidopsis lyrata aly-MIR160b precursor miRNA

Sequence

107 reads, 3731 reads per million, 1 experiments

uauauauagauuuaaggucgUGCCUGGCUCCCUGUAUGCCAcaagaaaacaucgauuuaguuacaaaaucgaucacuagugGCGUACAGAGUAGUCAAGCAUGaccaaagcuuucuugauauaua
(((((..(((.....((((((((.((((((.(((((((((((.((.....((((((((.......))))))))..)).))))))))))).).))))).)))))))).......)))..)))))..

Structure

--     au   --uuuaa        C     - C           a  aaaac        ag 
  uauau  aga       ggucgUGC UGGCU C CUGUAUGCCAc ag     aucgauuu  u
  |||||  |||       |||||||| ||||| | ||||||||||| ||     ||||||||  u
  auaua  ucu       ccaGUACG ACUGA G GACAUGCGgug uc     uagcuaaa  a
au     gu   uucgaaa        A     U A           a  ---ac        ac 

Annotation confidence Not enough data

Genome context

GL348719.1: 11280816-11280940 [-]

Mature aly-miR160b-5p

• Accession: MIMAT0017437
• Description: Arabidopsis lyrata aly-miR160b-5p mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCA - 41
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR160b-3p

• Accession: MIMAT0017438
• Description: Arabidopsis lyrata aly-miR160b-3p mature miRNA
• Sequence: 82 - GCGUACAGAGUAGUCAAGCAUG - 103
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103