Stem-loop aly-MIR862

Accession

MI0014628

Description

Arabidopsis lyrata aly-MIR862 precursor miRNA MIR862

Gene
family

RF04187; MIR862

Sequence

35 reads, 1220 reads per million, 1 experiments

acaauuauggaaugacaagcauguacugaaacugagaguauaugggcacuguguccaacugaaagagaaaagacacaaaguuuccuuauaaauacaguacaaaucacaaguucagccaucuuauauguacaguaaucuUCCAAUAGGUCUAGCAUGUGCugaaacuguguguuguguguacaauguucucauauacacacaguuucagcACAUGCUGGAUCUACUUGAAGacuacuguucuuauaagguacugaacuuguuaucuguacuguguauauaugagaucucuguauucuugcucuuuuaguuugacacuuuguucucauauacacucgguuucagcacaugcuugacuuacuugcuugu
...............(((((((((.(((((((((((.(((((((((.((.(((((.(((((((((((..((((.(((.((((((..((((.((((((((((.((.((((((((((..((((((((.(.((((((.(((((...(((((((((((((((((((((((((((((.(((((...........))))))))))))))))))))))))))))))))))...))))).)))))).).)))))))).)))))))))).)).)))))))))).)))).)))).)).)))..)))).))))))))))).)))))...)).))))))))).))))))))))).)))))))))..............

Structure

acaauuauggaauga         a           a         c  --u     c           aa    -c   a  -    cu    a          a  c          cc        u u      a     CAA                             u     uaca 
               caagcaugu cugaaacugag guauauggg ac   guguc aacugaaagag  aaga  aca ag uuuc  uaua auacaguaca au acaaguucag  aucuuaua g acagua ucuUC   UAGGUCUAGCAUGUGCugaaacugugugu gugug    a
               ||||||||| ||||||||||| ||||||||| ||   ||||| |||||||||||  ||||  ||| || ||||  |||| |||||||||| || ||||||||||  |||||||| | |||||| |||||   ||||||||||||||||||||||||||||| |||||    u
               guucguaca gacuuuggcuc cauauacuc ug   cacag uugauuuucuc  uucu  ugu uc agag  auau ugugucaugu ua uguucaaguc  uggaauau c ugucau aGAAG   AUCUAGGUCGUACAcgacuuugacacaca uauac    g
-uguucguucauuca         c           a         u  uuu     u           -g    ua   c  u    -u    a          c  u          -a        u u      c     UUC                             -     ucuu 

Annotation confidence Low

Genome context

GL348716.1: 3826645-3827010 [+]

Mature aly-miR862-5p

• Accession: MIMAT0017653
• Description: Arabidopsis lyrata aly-miR862-5p mature miRNA
• Sequence: 139 - UCCAAUAGGUCUAGCAUGUGC - 159
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR862-3p

• Accession: MIMAT0017654
• Description: Arabidopsis lyrata aly-miR862-3p mature miRNA
• Sequence: 210 - ACAUGCUGGAUCUACUUGAAG - 230
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103