Stem-loop aly-MIR4245

Accession

MI0015807

Description

Arabidopsis lyrata aly-MIR4245 precursor miRNA

Literature search

1 open access papers mention aly-MIR4245
(1 sentences)

Sequence

3063 reads, 912.0 reads per million, 11 experiments

agcccaauuugaagaugAAUUGUCAGUAUAAAUCUUUGAUccaauauacuuuugauuaguagaugaguuuuuuuugacaauuaucaauuauauuaaagagugaucaauuaguauuggaACAAAGUUUUAUACUGACAAUucgaucuuaaaaagcagaag
...........(((((((((((((((((((((.(((((.((((((((....(((((((.(...(((.......((((......)))).....)))...).)))))))...)))))))).))))).)))))))))))))))).)))))............

Structure

-agcccaauuug     -                U     A        acuu       g aga   guuuuuu    ca 
            aagau gAAUUGUCAGUAUAAA CUUUG Uccaauau    uugauua u   uga       uuga  a
            ||||| |||||||||||||||| ||||| ||||||||    ||||||| |   |||       ||||   
            uucua cuUAACAGUCAUAUUU GAAAC agguuaug    aacuagu a   auu       aacu  u
gaagacgaaaaa     g                U     A        -auu       g gaa   --auauu    au 

Annotation confidence Medium

Genome context

GL348720.1: 14956933-14957091 [+]

Mature aly-miR4245-5p

• Accession: MIMAT0057408
• Description: Arabidopsis lyrata aly-miR4245-5p mature miRNA
• Sequence: 18 - AAUUGUCAGUAUAAAUCUUUGAU - 40
• Evidence: experimental ; unknown

Mature aly-miR4245-3p

• Accession: MIMAT0017934
• Description: Arabidopsis lyrata aly-miR4245-3p mature miRNA
• Sequence: 119 - ACAAAGUUUUAUACUGACAAU - 139
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103