miRBase entry: aly-MIR4245

Stem-loop aly-MIR4245


Accession
MI0015807
Description
Arabidopsis lyrata aly-MIR4245 precursor miRNA


Sequence

2 reads, 35 reads per million, 1 experiments
agcccaauuugaagaugaauugucaguauaaaucuuugauccaauauacuuuugauuaguagaugaguuuuuuuugacaauuaucaauuauauuaaagagugaucaauuaguauuggaACAAAGUUUUAUACUGACAAUucgaucuuaaaaagcagaag
...........(((((((((((((((((((((.(((((.((((((((....(((((((.(...(((.......((((......)))).....)))...).)))))))...)))))))).))))).)))))))))))))))).)))))............

Structure
-agcccaauuug     -                u     a        acuu       g aga   guuuuuu    ca 
            aagau gaauugucaguauaaa cuuug uccaauau    uugauua u   uga       uuga  a
            ||||| |||||||||||||||| ||||| ||||||||    ||||||| |   |||       ||||   
            uucua cuUAACAGUCAUAUUU GAAAC agguuaug    aacuagu a   auu       aacu  u
gaagacgaaaaa     g                U     A        -auu       g gaa   --auauu    au 


Annotation confidence Not enough data
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Genome context
GL348720.1: 14956933-14957091 [+]

Database links

Mature aly-miR4245

Accession MIMAT0017934
Description Arabidopsis lyrata aly-miR4245 mature miRNA
Sequence 119 - ACAAAGUUUUAUACUGACAAU - 139
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103