Accession
MI0014525
Description
Arabidopsis lyrata
aly-MIR162a precursor miRNA
Sequence
81
reads,
2824
reads per million, 1 experiments
gauucgggaaauuuuauguuucuuugccauuuuuuuuggaguuuaguuggaaaaagagugagagucgcuGGAGGCAGCGGUUCAUCGAUCucuuccugggaacgaauauauaaauauugaaaaagcaugaauagaUCGAUAAACCUCUGCAUCCAGcguuugccucuuuaucuuuguuauuggcuucaauuuuuuugguuuuugaaaaaagugagggaaaacagaguc
(((((......((((((.((((...((((......((((((((.....(((.((((((.(.(((.(((((((.((((.((((.((((((((.(((.((......(((((....))))).......)).))).)))))))).)))).)))).)))))))))).))))))).)))........))))))))......))))....))))...)))))).......)))))
(((((......((((((.((((...((((......((((((((.....(((.((((((.(.(((.(((((((.((((.((((.((((((((.(((.((......(((((....))))).......)).))).)))))))).)))).)))).)))))))))).))))))).)))........))))))))......))))....))))...)))))).......)))))
Structure
-gggaaa --g -uuu uuuuuu ---uaguu a u a u G C C c c -ggaacg a
gauuc uuuuau uuuc gcca uuggaguu gga aaagag g gag cgcuGGA GCAG GGUU AUCGAUCu uuc ug aauau u
||||| |||||| |||| |||| |||||||| ||| |||||| | ||| ||||||| |||| |||| |||||||| ||| || |||||
cugag ggagug aaag uggu aacuucgg ucu uuucuc c uuu gcGACCU CGUC CCAA UAGCUaga aag ac uuaua a
acaaaag aaa uuuu uuuuuu uuauuguu a - g - A U A u u gaaaaag a
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348718.1: 3221153-3221380 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR162a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR162a-5p
| Accession | MIMAT0017445 |
| Description | Arabidopsis lyrata aly-miR162a-5p mature miRNA |
| Sequence | 70 - GGAGGCAGCGGUUCAUCGAUC - 90 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR162a-3p
| Accession | MIMAT0017446 |
| Description | Arabidopsis lyrata aly-miR162a-3p mature miRNA |
| Sequence | 136 - UCGAUAAACCUCUGCAUCCAG - 156 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
References
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