Stem-loop aly-MIR171b

Accession

MI0014561

Description

Arabidopsis lyrata aly-MIR171b precursor miRNA

Sequence

39 reads, 1360 reads per million, 1 experiments

gagugauuuuauguaagguaacgcgAGAUAUUAGUGCGGUUCAAUCaaauagucguccucuuaacucauggagaucgguguuguucgaUUGAGCCGUGCCAAUAUCACGcgguaaaccaaaauggcaaagaucgauc
((.(((((((.(((..(((..((((.((((((.(((((((((((((.((((((((..((((........))))..)))..))))).))))))))))))).)))))).))))....)))......)))))))))).))

Structure

  g       a   ----aa   --aa    A      A             a     --   uc    uaa 
ga ugauuuu ugu      ggu    cgcg GAUAUU GUGCGGUUCAAUC aauag  ucg  cucu   c
|| ||||||| |||      |||    |||| |||||| ||||||||||||| |||||  |||  ||||    
cu gcuagaa acg      cca    gcGC CUAUAA CGUGCCGAGUUag uuguu  ggc  gagg   u
  a       -   guaaaa   aaug    A      C             c     gu   ua    uac 

Annotation confidence Medium

Genome context

GL348713.1: 4720122-4720258 [-]

Mature aly-miR171b-5p

• Accession: MIMAT0017517
• Description: Arabidopsis lyrata aly-miR171b-5p mature miRNA
• Sequence: 26 - AGAUAUUAGUGCGGUUCAAUC - 46
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR171b-3p

• Accession: MIMAT0017518
• Description: Arabidopsis lyrata aly-miR171b-3p mature miRNA
• Sequence: 89 - UUGAGCCGUGCCAAUAUCACG - 109
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103