Stem-loop aly-MIR4224

Accession

MI0015785

Description

Arabidopsis lyrata aly-MIR4224 precursor miRNA

Sequence

2 reads, 70 reads per million, 1 experiments

aaagguuuuuuucgggacagagaugagaaagacucagcuauuuguugaaaaugaaauaucugugaagcgaaaaaccuuuuuuuuuauucaacaaaCAACUGAGCUUCCUCAUCUCUgucacaauaagagaucuaug
..(((((((((...(((((((((((((.(((.(((((...(((((((((...((((.....((..........))....))))...)))))))))...)))))))).)))))))))))).)...)))))))))...

Structure

-aa         ucg -            a   a     cua         aau    uaucu  gaag 
   agguuuuuu   g gacagagaugag aag cucag   uuuguugaa   gaaa     gu    c
   |||||||||   | |||||||||||| ||| |||||   |||||||||   ||||     ||     
   ucuagagaa   c cugUCUCUACUC UUC GAGUC   aaacaacuu   uuuu     ca    g
gua         uaa a            C   -     AAC         auu    -uuuc  aaaa 

Annotation confidence Not enough data

Genome context

GL348713.1: 24611224-24611359 [+]

Mature aly-miR4224

• Accession: MIMAT0017912
• Description: Arabidopsis lyrata aly-miR4224 mature miRNA
• Sequence: 96 - CAACUGAGCUUCCUCAUCUCU - 116
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103