Stem-loop aly-MIR771

Accession

MI0014598

Description

Arabidopsis lyrata aly-MIR771 precursor miRNA

Sequence

auuccacaUGAGCCUCUGUGGCAGCCCUCgcaaugaucucaguagagugcaugccaaguucuuguaaagacguagaugaGGGCUCCUCAGAUGUUCAUGucgaau
((((.((((((((.((((.((.((((((((((.((..(((....)))..))))).....((((((....))).))).))))))))).)))).)))))))).))))

Structure

    c        C    U  C       -----------------------   a  au   a 
auuc acaUGAGC UCUG GG AGCCCUC                       gca ug  cuc g
|||| |||||||| |||| || |||||||                       ||| ||  |||  
uaag uGUACUUG AGAC CC UCGGGag                       cgu ac  gag u
    c        U    U  -       uagaugcagaaauguucuugaac   -  gu   a 

Annotation confidence Not enough data

Genome context

GL348717.1: 16404124-16404228 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR771

Mature aly-miR771-5p

• Accession: MIMAT0017591
• Description: Arabidopsis lyrata aly-miR771-5p mature miRNA
• Sequence: 9 - UGAGCCUCUGUGGCAGCCCUC - 29
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR771-3p

• Accession: MIMAT0017592
• Description: Arabidopsis lyrata aly-miR771-3p mature miRNA
• Sequence: 80 - GGGCUCCUCAGAUGUUCAUG - 99
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103