Stem-loop aly-MIR399b

Accession

MI0014589

Description

Arabidopsis lyrata aly-MIR399b precursor miRNA

Sequence

5 reads, 174 reads per million, 1 experiments

cauguaagcucacaaguuuuaGGGCGCCUCUCCAUUGGCAGGuccuuuauuuccaaauauacacauacauauaugaauauagaaaauuucgauuuauauaugaccUGCCAAAGGAGAGUUGCCCUGaaacugguucagcuuaauuaaacacaug
((((((((((.((.((((((((((((.((((((.((((((((((........................((((((((((...(((...))).)))))))))))))))))))).)))))).)))))))))))).))..)))))........)))))

Structure

     --------     -c  a            C      A          cuuuauuuccaaauauacacauac          aua   a 
caugu        aagcu  ac aguuuuaGGGCG CUCUCC UUGGCAGGuc                        auauaugaau   gaa  
|||||        |||||  || |||||||||||| |||||| ||||||||||                        ||||||||||   ||| a
guaca        uucga  ug ucaaaGUCCCGU GAGAGG AACCGUccag                        uauauauuua   cuu  
     caaauuaa     cu  g            U      A          ------------------------          --g   u 

Annotation confidence Low

Genome context

GL348714.1: 1307899-1308052 [+]

Mature aly-miR399b-5p

• Accession: MIMAT0017573
• Description: Arabidopsis lyrata aly-miR399b-5p mature miRNA
• Sequence: 22 - GGGCGCCUCUCCAUUGGCAGG - 42
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR399b-3p

• Accession: MIMAT0017574
• Description: Arabidopsis lyrata aly-miR399b-3p mature miRNA
• Sequence: 106 - UGCCAAAGGAGAGUUGCCCUG - 126
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103