Stem-loop aly-MIR4226

Accession

MI0015787

Description

Arabidopsis lyrata aly-MIR4226 precursor miRNA

Sequence

aagcaaugaauaguacauugUACAAGAUGCAUUCGAGCAAUAaaugaguuugcaugcccucguggcuuuguucuuccaaccauuuuuguuugucaucaucugauacccucacccaaacucauuuauugcucgcauucguuuguacaauguacaaacucaauugaga
............((((((((((((.((((.((.(((((((((((((((((((...(((.....)))........................(((((.....)))))........))))))))))))))))))).)).))))))))))))))))...(((....))).

Structure

--aagcaaugaaua            A    C  U                   caugcccucguggcuuuguucuuccaaccauuuuuguu     u 
              guacauugUACA GAUG AU CGAGCAAUAaaugaguuug                                      uguca c
              |||||||||||| |||| || |||||||||||||||||||                                      ||||| a
              cauguaacaugu uugc ua gcucguuauuuacucaaac                                      auagu u
agaguuaacucaaa            -    u  c                   ------------------------------ccacuccc     c 

Annotation confidence Not enough data

Genome context

GL348714.1: 1204559-1204724 [+]

Mature aly-miR4226

• Accession: MIMAT0017914
• Description: Arabidopsis lyrata aly-miR4226 mature miRNA
• Sequence: 21 - UACAAGAUGCAUUCGAGCAAUA - 42
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103