Stem-loop aly-MIR391

Accession

MI0014571

Description

Arabidopsis lyrata aly-MIR391 precursor miRNA MIR391

Gene
family

RF03334; MIR391

Sequence

177 reads, 6172 reads per million, 1 experiments

gcaaacaaagauuugcUUCGCAGGAGAGAUAGCGCCAccaccucuucuaagaaguuaaccaguggugACGGUAUCUCUCCUACGUAGCaauccuuauauaugc
(((....(((..(((((.((.((((((((((.((.((((((..((((...)))).......)))))).)).)))))))))).)).)))))..))).....)))

Structure

   -aaca   au     U  C          G  C      -----cu    u 
gca     aag  uugcU CG AGGAGAGAUA CG CAccac       cuuc  
|||     |||  ||||| || |||||||||| || ||||||       |||| a
cgu     uuc  aaCGA GC UCCUCUCUAU GC guggug       gaag  
   auaua   cu     U  A          G  A      accaauu    a 

Annotation confidence Low

Genome context

GL348720.1: 19524569-19524671 [+]

Mature aly-miR391-5p

• Accession: MIMAT0017537
• Description: Arabidopsis lyrata aly-miR391-5p mature miRNA
• Sequence: 17 - UUCGCAGGAGAGAUAGCGCCA - 37
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR391-3p

• Accession: MIMAT0017538
• Description: Arabidopsis lyrata aly-miR391-3p mature miRNA
• Sequence: 68 - ACGGUAUCUCUCCUACGUAGC - 88
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103