Stem-loop aly-MIR172c

Accession

MI0014565

Description

Arabidopsis lyrata aly-MIR172c precursor miRNA

Sequence

31 reads, 1081 reads per million, 1 experiments

agcuacuguucgcuguuGGAGCAUCAUCAAGAUUCACAaaucaucaaguauucguguaaaugaacccauuuauaauuauauuguugauguauguaugAGAAUCUUGAUGAUGCUGCAGcugcaaucaguggcu
((((((((...((.((((.(((((((((((((((((((...((((((((((...((((((((....))))))))...))))..))))))..)))....)))))))))))))))).)))).))...))))))))

Structure

        uuc  u    G                ----   aau      --    ucg        a 
agcuacug   gc guuG AGCAUCAUCAAGAUUC    ACA   caucaa  guau   uguaaaug a
||||||||   || |||| ||||||||||||||||    |||   ||||||  ||||   ||||||||  
ucggugac   cg cGAC UCGUAGUAGUUCUAAG    ugu   guaguu  uaua   auauuuac c
        uaa  u    G                Agua   -au      gu    uua        c 

Annotation confidence Not enough data

Genome context

GL348715.1: 4586846-4586978 [-]

Mature aly-miR172c-5p

• Accession: MIMAT0017525
• Description: Arabidopsis lyrata aly-miR172c-5p mature miRNA
• Sequence: 18 - GGAGCAUCAUCAAGAUUCACA - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR172c-3p

• Accession: MIMAT0017526
• Description: Arabidopsis lyrata aly-miR172c-3p mature miRNA
• Sequence: 98 - AGAAUCUUGAUGAUGCUGCAG - 118
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103