miRBase entry: aly-MIR166f

Stem-loop aly-MIR166f


Accession
MI0014537
Description
Arabidopsis lyrata aly-MIR166f precursor miRNA
Gene family
MIPF0000004; MIR166


Sequence

108 reads, 3766 reads per million, 1 experiments
aaguucaggUGAAUGAUGCCUGGCUCGAGAccauuccaucucaugaucaugaugaugauauaaugaugaugaugaugUCGGACCAGGCUUCAUUCCCCucaacuu
(((((.(((.((((((.((((((.((((.(.(((..((((((((.(((((....)))))...)))).))))))).).)))).)))))).)))))).))).)))))

Structure
     c   U      U      C    G c   uc    -    --g     g 
aaguu agg GAAUGA GCCUGG UCGA A cau  cauc ucau   aucau a
||||| ||| |||||| |||||| |||| | |||  |||| ||||   |||||  
uucaa uCC CUUACU CGGACC GGCU u gua  guag agua   uagua u
     c   C      U      A    g a   --    u    aua     g 


Annotation confidence Not enough data
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Genome context
GL348720.1: 4172055-4172159 [-]

Database links

Mature aly-miR166f-5p

Accession MIMAT0017469
Description Arabidopsis lyrata aly-miR166f-5p mature miRNA
Sequence 10 - UGAAUGAUGCCUGGCUCGAGA - 30
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR166f-3p

Accession MIMAT0017470
Description Arabidopsis lyrata aly-miR166f-3p mature miRNA
Sequence 78 - UCGGACCAGGCUUCAUUCCCC - 98
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103