Stem-loop aly-MIR395e

Accession

MI0014579

Description

Arabidopsis lyrata aly-MIR395e precursor miRNA

Sequence

gucggauguuuccuagaGUUCCUCUGAGCACUUCAUUGgagauaccaucuuuuaucaaaugguuuucuaCUGAAGUGUUUGGGGGAACUCccggacucauucgau
((((((((..(((..((((((((((((((((((((.((((((.(((((..........))))))))))).))))))))))))))))))))..)))..))))))))

Structure

        uu   ua                    U      u     cuuu 
gucggaug  ucc  gaGUUCCUCUGAGCACUUCA UGgaga accau    u
||||||||  |||  |||||||||||||||||||| |||||| |||||     
uagcuuac  agg  CUCAAGGGGGUUUGUGAAGU aucuuu uggua    a
        uc   cc                    C      -     aacu 

Annotation confidence Low

Genome context

GL348714.1: 14000953-14001057 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from aly-MIR395e

Mature aly-miR395e-5p

• Accession: MIMAT0017553
• Description: Arabidopsis lyrata aly-miR395e-5p mature miRNA
• Sequence: 18 - GUUCCUCUGAGCACUUCAUUG - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR395e-3p

• Accession: MIMAT0017554
• Description: Arabidopsis lyrata aly-miR395e-3p mature miRNA
• Sequence: 70 - CUGAAGUGUUUGGGGGAACUC - 90
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103