Stem-loop aly-MIR4247

Accession

MI0015809

Description

Arabidopsis lyrata aly-MIR4247 precursor miRNA

Sequence

3499 reads, 763.0 reads per million, 11 experiments

aaauuauaauuccuugaauaUGUAUCCUAAUAUUAGACCCCcauuuaguuuuauuuaugaacauggaauuugcaaggaaacaauauAAUACUUAAUGGGGGUCUAUUAUuaggauacauuuucauggaacaauaauuuug
(((((((..((((.((((.(((((((((((((.((((((((((((.(((.((((.......(.((.......)).)........)))).))).)))))))))))).))))))))))))).)))).))))..)))))))..

Structure

--       aa    u    u             U            u   u    -uuaugaa a  ga 
  aaauuau  uucc ugaa aUGUAUCCUAAUA UAGACCCCcauu agu uuau        c ug  a
  |||||||  |||| |||| ||||||||||||| |||||||||||| ||| ||||        | ||  u
  uuuaaua  aagg acuu uacauaggauUAU AUCUGGGGGUAA UCA AAua        g ac  u
gu       ac    u    u             U            U   U    uaacaaag a  gu 

Annotation confidence Medium

Genome context

GL348720.1: 21909877-21910016 [-]

Mature aly-miR4247-5p

• Accession: MIMAT0017936
• Description: Arabidopsis lyrata aly-miR4247-5p mature miRNA
• Sequence: 21 - UGUAUCCUAAUAUUAGACCCC - 41
• Evidence: experimental ; SOLiD [1]

Mature aly-miR4247-3p

• Accession: MIMAT0057409
• Description: Arabidopsis lyrata aly-miR4247-3p mature miRNA
• Sequence: 87 - AAUACUUAAUGGGGGUCUAUUAU - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103