Stem-loop aly-MIR172b

Accession

MI0014564

Description

Arabidopsis lyrata aly-MIR172b precursor miRNA

Sequence

2736 reads, 95397 reads per million, 1 experiments

uagcucaucugucguuguuuguagguGCAGCACCAUCAAGAUUCACAugaaaauugauaaaucuccuaaauuaggguuuugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaaucgacggcuacaaaauaccuaaagcug
(((((.....(((((((.((((.(((((((((.(((((((((((.((((.....((.((((.(.((((...))))).)))).))....)))).))))))))))).))))))))).)))).)))))))..............)))))

Structure

     ---------caucu       u    a         C           A    aaaau  a    u u    a 
uagcu              gucguug uugu gguGCAGCA CAUCAAGAUUC CAug     ug uaaa c ccua  
|||||              ||||||| |||| ||||||||| ||||||||||| ||||     || |||| | |||| a
gucga              cggcagc aaca cUACGUCGU GUAGUUCUAAG guau     au guuu g ggau  
     aauccauaaaacau       u    a         A           A    -augu  a    u -    u 

Annotation confidence Low

Genome context

GL348718.1: 1397230-1397375 [-]

Mature aly-miR172b-5p

• Accession: MIMAT0017523
• Description: Arabidopsis lyrata aly-miR172b-5p mature miRNA
• Sequence: 27 - GCAGCACCAUCAAGAUUCACA - 47
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR172b-3p

• Accession: MIMAT0017524
• Description: Arabidopsis lyrata aly-miR172b-3p mature miRNA
• Sequence: 93 - AGAAUCUUGAUGAUGCUGCAU - 113
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103