Stem-loop aly-MIR2111c

Accession

MI0026013

Description

Arabidopsis lyrata aly-MIR2111c precursor miRNA

Sequence

guauuggugaggaucgggUAAUCUGCAUCCUGAGGUUUAaagcuuaauuuaagcagaaaauuuguauacgcauauacguauguguguugguauagcuuuuaGUCCUCGGGAUGCGGAUUACCucuuccuuacuuacaauac
(((((((((((((..((((((((((((((((((((...((((((........(((((...)))))(((((((((....)))))))))......))))))....))))))))))))))))))))..)))))))...))))))

Structure

      ---       uc                    -UUU      uaauuuaagcagaaaauuugu         u 
guauug   gugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu                     auacgcaua a
||||||   |||||||  ||||||||||||||||||||    ||||||                     |||||||||  
cauaac   cauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga                     uguguguau c
      auu       uc                    UGau      ---------------uauggu         g 

Annotation confidence Low

Genome context

GL348768.1: 2630-2770 [-]

Mature aly-miR2111c-5p

• Accession: MIMAT0031384
• Description: Arabidopsis lyrata aly-miR2111c-5p mature miRNA
• Sequence: 19 - UAAUCUGCAUCCUGAGGUUUA - 39
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR2111c-3p

• Accession: MIMAT0031385
• Description: Arabidopsis lyrata aly-miR2111c-3p mature miRNA
• Sequence: 102 - GUCCUCGGGAUGCGGAUUACC - 122
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103