Stem-loop aly-MIR169c

Accession

MI0014547

Description

Arabidopsis lyrata aly-MIR169c precursor miRNA

Sequence

2 reads, 70 reads per million, 1 experiments

gucucaucuaaagccuugaaugugggaaaaaggccauuguuguuCAGCCAAGGAUGACUUGCCGGuagcuuuguauauuuacucuauauucgguuuauauuauggagauuaugcuuuauauauauauauacauaguuuuaauugauuuuuuuucguacguacguaaucuaauacgaaaaaguauuuacuuauuuauauguguguuggugagauguguaaacaaagcaagcccGGCAAGUCAUCUCUGGCUAUGcaacugccucuuccucucauucuaggcuuacgaugacac
((.(((((..((((((.(((((.(((((..((((....(((((..(((((.((((((((((((((..(((((((.......(((((((............))))))).((((((.((.(((....(((((((((....(((..(((.((((((((((..............)))))))))).)))...)))....)))))))))..))).)).)))))))))))))....)))))))))))))).)))))..))))).)))).)))))..))))).))))))..))))).))

Structure

  c     ua      u     -u     aa    cauu     uC     A              --ua       auauuuacucuauauucgguuuauauuauggaga      u  a   auau         guuu   -uu   u          cguacg 
gu ucauc  aagccu gaaug  gggaa  aggc    guugu  AGCCA GGAUGACUUGCCGG    gcuuugu                                  uuaugc uu uau    auauacaua    uaa   gau uuuuuucgua      u
|| |||||  |||||| |||||  |||||  ||||    |||||  ||||| ||||||||||||||    |||||||                                  |||||| || |||    |||||||||    |||   ||| ||||||||||       
ca aguag  uucgga cuuac  uccuu  uccg    caacG  UCGGU UCUACUGAACGGcc    cgaaaca                                  aaugug ag gug    uguguguau    auu   uua gaaaaagcau      a
  c     ca      u     uc     -c    ---u     UA     C              cgaa       ----------------------------------      u  a   --gu         auuu   cau   u          aaucua 

Annotation confidence Not enough data

Genome context

GL348719.1: 23073353-23073644 [+]

Mature aly-miR169c-5p

• Accession: MIMAT0017489
• Description: Arabidopsis lyrata aly-miR169c-5p mature miRNA
• Sequence: 45 - CAGCCAAGGAUGACUUGCCGG - 65
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR169c-3p

• Accession: MIMAT0017490
• Description: Arabidopsis lyrata aly-miR169c-3p mature miRNA
• Sequence: 233 - GGCAAGUCAUCUCUGGCUAUG - 253
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103