Accession
MI0014591
Description
Arabidopsis lyrata
aly-MIR399d precursor miRNA
Sequence
gagagauaauguaugguuggauuacuGGGCGAAUACUCCUAUGGCAGAuagcuuugccuagauaugcaagcaaaaugcuucucUGCCAAAGGAGAUUUGCCCCGcaauucauccaugcaaaacaauacaucuuuc
(((((((..(((((((.((((((.(.((((((((.(((((.(((((((.((((((((............)))))..)))..))))))).))))))))))))).).)))))).))))))).........)))))))
(((((((..(((((((.((((((.(.((((((((.(((((.(((((((.((((((((............)))))..)))..))))))).))))))))))))).).)))))).))))))).........)))))))
Structure
-------aa u a u A A -u -- cuaga
gagagau uguaugg uggauu c GGGCGAAU CUCCU UGGCAGA agc uuugc u
||||||| ||||||| |||||| | |||||||| ||||| ||||||| ||| |||||
cuuucua acguacc acuuaa G CCCGUUUA GAGGA ACCGUcu ucg aaacg a
cauaacaaa u c C - A cu ua aacgu
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348716.1: 16217498-16217632 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aly-MIR399d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR399d-5p
| Accession | MIMAT0017577 |
| Description | Arabidopsis lyrata aly-miR399d-5p mature miRNA |
| Sequence | 27 - GGGCGAAUACUCCUAUGGCAGA - 48 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR399d-3p
| Accession | MIMAT0017578 |
| Description | Arabidopsis lyrata aly-miR399d-3p mature miRNA |
| Sequence | 84 - UGCCAAAGGAGAUUUGCCCCG - 104 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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