miRBase entry: aly-MIR156h

Stem-loop aly-MIR156h


Accession
MI0014509
Description
Arabidopsis lyrata aly-MIR156h precursor miRNA


Sequence

3 reads, 105 reads per million, 1 experiments
gaaauguUGACAGAAGAAAGAGAGCACaaccugggauuagcaaaaagauaguuuugcccuugucgggaguguGCUCUCUUUCCUUCUGCCACCaucauc
...(((.((.((((((((((((((((((.(((((.(...((((((......))))))...).)))))..)))))))))))).)))))).)).)))....

Structure
-gaa   u  A      -            -a     g uua      ag 
    aug UG CAGAAG AAAGAGAGCACa  ccugg a   gcaaaa  a
    ||| || |||||| ||||||||||||  ||||| |   ||||||   
    uaC AC GUCUUC UUUCUCUCGugu  gggcu u   cguuuu  u
cuac   C  C      C            ga     g ucc      ga 


Annotation confidence Not enough data
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Genome context
GL348720.1: 17184369-17184467 [-]

Database links

Mature aly-miR156h-5p

Accession MIMAT0017411
Description Arabidopsis lyrata aly-miR156h-5p mature miRNA
Sequence 8 - UGACAGAAGAAAGAGAGCAC - 27
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR156h-3p

Accession MIMAT0017412
Description Arabidopsis lyrata aly-miR156h-3p mature miRNA
Sequence 73 - GCUCUCUUUCCUUCUGCCACC - 93
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103