Stem-loop aly-MIR168a

Accession

MI0014543

Description

Arabidopsis lyrata aly-MIR168a precursor miRNA

Sequence

307 reads, 10704 reads per million, 1 experiments

gagucucaccgucgggcucggauUCGCUUGGUGCAGGUCGGGAAccaauucggcugacacagccucgugacuuuaaaaccuuuauugguuugugagcagggauuggauCCCGCCUUGCAUCAACUGAAUcggauccccgagguguaagaaaacuc
((((((((((.(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((..(((((......)))))..))))).))))))).))))).)))))))))).)))))).))..)))))))))..)))...)))

Structure

   ---   --    g     -c  g      C          U     A       ggcugacacagccucg  a   ua     uu 
gag   ucu  cacc ucggg  uc gauUCG UUGGUGCAGG CGGGA ccaauuc                ug cuu  aaacc  u
|||   |||  |||| |||||  || |||||| |||||||||| ||||| |||||||                || |||  |||||   
cuc   aga  gugg agccc  ag cUAAGU AACUACGUUC GCCCu gguuagg                ac gag  uuugg  a
   aaa   au    -     cu  g      C          C     a       ---------------g  -   ug     uu 

Annotation confidence Medium

Genome context

GL348719.1: 10245606-10245760 [-]

Mature aly-miR168a-5p

• Accession: MIMAT0017481
• Description: Arabidopsis lyrata aly-miR168a-5p mature miRNA
• Sequence: 24 - UCGCUUGGUGCAGGUCGGGAA - 44
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR168a-3p

• Accession: MIMAT0017482
• Description: Arabidopsis lyrata aly-miR168a-3p mature miRNA
• Sequence: 109 - CCCGCCUUGCAUCAACUGAAU - 129
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103