Stem-loop aly-MIR3448

Accession

MI0014664

Description

Arabidopsis lyrata aly-MIR3448 precursor miRNA

Sequence

9 reads, 314 reads per million, 1 experiments

uauugaCCAGGAAAACAUCUUCAGACAcgagcuugucagucaauucccagacuugacuugacacaaacucaugUCUGAGGAUUUUUUUUGUGGUCaaua
(((((((((.(((((.(((((((((((.(((..((((((((((.((...)).))))).)))))....))).)))))))))))..))))).)))))))))

Structure

         G     -C           c   --cu     -     u  c 
uauugaCCA GAAAA  AUCUUCAGACA gag    uguca gucaa uc  
||||||||| |||||  ||||||||||| |||    ||||| ||||| || c
auaaCUGGU UUUUU  UAGGAGUCUgu cuc    acagu caguu ag  
         G     UU           a   aaac     u     c  a 

Annotation confidence Low

Genome context

GL348719.1: 4173317-4173415 [-]

Mature aly-miR3448-5p

• Accession: MIMAT0017731
• Description: Arabidopsis lyrata aly-miR3448-5p mature miRNA
• Sequence: 7 - CCAGGAAAACAUCUUCAGACA - 27
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR3448-3p

• Accession: MIMAT0017732
• Description: Arabidopsis lyrata aly-miR3448-3p mature miRNA
• Sequence: 74 - UCUGAGGAUUUUUUUUGUGGUC - 95
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103