Stem-loop aly-MIR774a

Accession

MI0014599

Description

Arabidopsis lyrata aly-MIR774a precursor miRNA

Sequence

149 reads, 18.0 reads per million, 8 experiments

gcguuguucauuuggauucauauucgagacGAAGAUAUGGGUGACUAAUacuuaagauuuuggucaauuuaaauuaccaaucuaauuaUUUGUUACCCAUAUCUCCAUCuccaauuuaaucucuuaaaagucgu
(((..........(((((...(((.((((.(.(((((((((((((.((((.(((.(((..((((.(((....))))))))))))).)))).))))))))))))).).)))).)))..))))).........)))

Structure

   uuguucauuu     cau   c    c A             U    c   a   uu    c   u 
gcg          ggauu   auu gaga G AGAUAUGGGUGAC AAUa uua gau  uggu aau u
|||          |||||   ||| |||| | ||||||||||||| |||| ||| |||  |||| |||  
ugc          ucuaa   uaa cuCU C UCUAUACCCAUUG UUau aau cua  acca uua a
   -ugaaaauuc     -uu   c    A C             U    u   -   --    -   a 

Annotation confidence Medium

Genome context

GL348714.1: 3372430-3372563 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aly-MIR774a

Mature aly-miR774a-5p

• Accession: MIMAT0017593
• Description: Arabidopsis lyrata aly-miR774a-5p mature miRNA
• Sequence: 31 - GAAGAUAUGGGUGACUAAU - 49
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR774a-3p

• Accession: MIMAT0017596
• Description: Arabidopsis lyrata aly-miR774a-3p mature miRNA
• Sequence: 89 - UUUGUUACCCAUAUCUCCAUC - 109
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103