Stem-loop aly-MIR3443

Accession

MI0014659

Description

Arabidopsis lyrata aly-MIR3443 precursor miRNA

Sequence

4 reads, 139 reads per million, 1 experiments

aauuuggcuaaucagcaaaacuaaaUUCUAAUCCCGCCAUGCACCGaaaaaauucuagacugaaauaauacagucugugguuuuccgGUGCCUUGUGAGAUUAGAGUUuuaucuugugaauuugcuuaaggaguu
.....(((.(((..((((....(((((((((((.(((...((((((..((((((.(((((((........))))))).)))))).))))))...))).)))))))))))....))))..))).))).........

Structure

----aauuu   u   ca    aacu           C   CAU      aa      c       aaa 
         ggc aau  gcaa    aaaUUCUAAUC CGC   GCACCG  aaaauu uagacug   u
         ||| |||  ||||    ||||||||||| |||   ||||||  |||||| |||||||    
         ucg uua  uguu    uUUGAGAUUAG GUG   CGUGgc  uuuugg gucugac   a
uugaggaau   u   ag    cuau           A   UUC      -c      u       aua 

Annotation confidence Low

Genome context

GL348717.1: 2671734-2671868 [+]

Mature aly-miR3443-5p

• Accession: MIMAT0017719
• Description: Arabidopsis lyrata aly-miR3443-5p mature miRNA
• Sequence: 26 - UUCUAAUCCCGCCAUGCACCG - 46
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR3443-3p

• Accession: MIMAT0017720
• Description: Arabidopsis lyrata aly-miR3443-3p mature miRNA
• Sequence: 88 - GUGCCUUGUGAGAUUAGAGUU - 108
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103