Stem-loop aly-MIR169n

Accession

MI0014558

Description

Arabidopsis lyrata aly-MIR169n precursor miRNA

Sequence

12 reads, 418 reads per million, 1 experiments

gaaguguauaacgaggaaaagaggucuaacauggcgaaaagagucauguuuagUAGCCAAAGAUGACUUGCCUGaucuuuuucaccuccaugauucaauuugaauuccauggguuuuggauuauuaugcauuuuaaaagcauaauaguucgaaaaucauguugaaucuugcggguuagguuucaGGCAGUCUCUUUGGCUAUCuugacaugcuuuuuucauucauguuauaccuauuuuucuuucugucuuc
((((...(((..((((((((.((((.((((((((.((((((((.((((((.((((((((((((.((((.((((((....(((.((((.((.(((((((.........(((((.((((((((((((((((.........)))))))))))))))).)))))))))))).)).)))).)))..)))))))))))))))))))).)).))))))))))))))..)))))))).)))).))))))))..)))))))

Structure

    ugu   ac        g    c        -c        u      u  -          U    U      ucuu   c    c  u       uuugaauuc     g                auu 
gaag   aua  gaggaaaa aggu uaacaugg  gaaaagag cauguu ag UAGCCAAAGA GACU GCCUGa    uuu accu ca gauucaa         caugg uuuuggauuauuaugc   u
||||   |||  |||||||| |||| ||||||||  |||||||| |||||| || |||||||||| |||| ||||||    ||| |||| || |||||||         ||||| ||||||||||||||||   u
cuuc   ugu  uucuuuuu ucca auuguacu  cuuuuuuc guacag uC AUCGGUUUCU CUGA CGGacu    gga uggg gu cuaaguu         guacu aaagcuugauaauacg   a
    ---   cu        a    u        ua        -      u  U          -    -      --uu   u    c  u       ---------     a                aaa 

Annotation confidence Low

Genome context

GL348717.1: 3151664-3151915 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aly-MIR169n

Mature aly-miR169n-5p

• Accession: MIMAT0017511
• Description: Arabidopsis lyrata aly-miR169n-5p mature miRNA
• Sequence: 54 - UAGCCAAAGAUGACUUGCCUG - 74
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR169n-3p

• Accession: MIMAT0017512
• Description: Arabidopsis lyrata aly-miR169n-3p mature miRNA
• Sequence: 185 - GGCAGUCUCUUUGGCUAUC - 203
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103