Stem-loop aly-MIR399c

Accession

MI0014590

Description

Arabidopsis lyrata aly-MIR399c precursor miRNA

Sequence

10 reads, 349 reads per million, 1 experiments

uaagcggagcaguaauaGGGCAUCUUUCUAUUGGCAGGagacucggcuauuuguaucuuuuguguucuuggcuauuggcuaugucacuUGCCAAAGGAGAGUUGCCCUGucacuacuuccgcuua
(((((((((.(((.((((((((.((((((.((((((((.(((..(((((...((................))...)))))..))).)))))))).)))))).)))))))).))).).))))))))

Structure

        - c   a        U      A        a   uc     uuu  aucuuuu 
uaagcgga g agu auaGGGCA CUUUCU UUGGCAGG gac  ggcua   gu       g
|||||||| | ||| |||||||| |||||| |||||||| |||  |||||   ||        
auucgccu c uca uGUCCCGU GAGAGG AACCGUuc cug  ucggu   cg       u
        u a   c        U      A        a   ua     uau  guucuug 

Annotation confidence Low

Genome context

GL348720.1: 20345020-20345144 [+]

Mature aly-miR399c-5p

• Accession: MIMAT0017575
• Description: Arabidopsis lyrata aly-miR399c-5p mature miRNA
• Sequence: 18 - GGGCAUCUUUCUAUUGGCAGG - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR399c-3p

• Accession: MIMAT0017576
• Description: Arabidopsis lyrata aly-miR399c-3p mature miRNA
• Sequence: 89 - UGCCAAAGGAGAGUUGCCCUG - 109
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103