miRBase entry: aly-MIR4234

Stem-loop aly-MIR4234


Accession
MI0015796
Description
Arabidopsis lyrata aly-MIR4234 precursor miRNA


Sequence

12 reads, 314 reads per million, 1 experiments
uuaugagguuuucuacucauugucaacuggguuuaaguuggaaauucaugauuucucauaucaaagcuagguugguccaauauuagaaauuauggacuucCAACUUAAAAUCAGUUGGCAAUuuuuuuggacuauuucucau
..((((((...((((...((((((((((((.((((((((((((.((((((((((((.((((....((((...))))...)))).)))))))))))).)))))))))))).)))))))))))).....)))).....))))))

Structure
uu      --uuu    --cuc            g            a            c    caaa    g 
  augagg     ucua     auugucaacugg uuuaaguuggaa uucaugauuucu auau    gcua  
  ||||||     ||||     |||||||||||| |||||||||||| |||||||||||| ||||    |||| g
  uacucu     aggu     UAACGGUUGACU AAAUUCAACcuu agguauuaaaga uaua    uggu  
--      uuauc    uuuuu            A            c            u    -acc    u 


Annotation confidence Not enough data
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Genome context
GL348717.1: 15135754-15135895 [-]

Database links

Mature aly-miR4234

Accession MIMAT0017923
Description Arabidopsis lyrata aly-miR4234 mature miRNA
Sequence 101 - CAACUUAAAAUCAGUUGGCAAU - 122
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103