miRBase entry: aly-MIR4228

Stem-loop aly-MIR4228


Accession
MI0015789
Description
Arabidopsis lyrata aly-MIR4228 precursor miRNA


Sequence

2 reads, 70 reads per million, 1 experiments
cggcguguuguuuuaaccuaAAAGCCUUGAACGCUGUCGUUucgccgucgacaacaaucacacgcgcacacuuccaccauuaucaucuauccaccacacagguucgucggaugcgaaacggugguguucagggcuuuuuuaagguugcuggauuuuauu
(((((..........((((((((((((((((((((((((((((((..((((((((..............................................))).)))))..))))))))))))))))))))))))))...))))))))).........

Structure
---------     uguuguuuua    ---                          cg     -   aaucacacgcgcacacuuccac 
         cggcg          accu   aAAAGCCUUGAACGCUGUCGUUucgc  ucgac aac                      c
         |||||          ||||   ||||||||||||||||||||||||||  ||||| |||                       
         gucgu          ugga   uuuucgggacuugugguggcaaagcg  ggcug uug                      a
uuauuuuag     ----------    auu                          ua     c   gacacaccaccuaucuacuauu 


Annotation confidence Not enough data
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Genome context
GL348714.1: 17393793-17393951 [+]

Database links

Mature aly-miR4228

Accession MIMAT0017916
Description Arabidopsis lyrata aly-miR4228 mature miRNA
Sequence 21 - AAAGCCUUGAACGCUGUCGUU - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103