miRBase entry: aly-MIR4228

Dead hairpin entry

Stem-loop aly-MIR4228


Accession
MI0015789
Description
Arabidopsis lyrata aly-MIR4228 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

1030 reads, 275.0 reads per million, 12 experiments
cggcguguuguuuuaaccuaAAAGCCUUGAACGCUGUCGUUucgccgucgacaacaaucacacgcgcacacuuccaccauuaucaucuauccaccacacagguucgucggaugcgaaacggugguguucagggcuuuuUUAAGGUUGCUGGAUUUUAUu
(((((..........((((((((((((((((((((((((((((((..((((((((..............................................))).)))))..))))))))))))))))))))))))))...))))))))).........

Structure
---------     uguuguuuua    ---                          cg     -   aaucacacgcgcacacuuccac 
         cggcg          accu   aAAAGCCUUGAACGCUGUCGUUucgc  ucgac aac                      c
         |||||          ||||   ||||||||||||||||||||||||||  ||||| |||                       
         GUCGU          UGGA   uuuucgggacuugugguggcaaagcg  ggcug uug                      a
uUAUUUUAG     ----------    AUU                          ua     c   gacacaccaccuaucuacuauu