Stem-loop ath-MIR4228

Accession

MI0015817

Description

Arabidopsis thaliana ath-MIR4228 precursor miRNA MIR4228

Gene
family

RF03720; MIR4228

Sequence

cggcguguuguuuuaaccuaAUAGCCUUGAACGCCGUCGUUucgucuccgacgacauucacacgcgcacacuuccacccuuaccaucuauccgucucacacgugcgUCGGAUGCGAAACGGUGGUGUucagggauuuuuuagguugccggauuuuacc
(((((..........((((((...(((((((((((((((((((((.(((((((.(((......(((.........................))).......)))))))))).))))))))))))))))))))).....))))))))))).........

Structure

---------     uguuguuuua      --UAG                     c       a   -ucacac   cacacuuccac 
         cggcg          accuaA     CCUUGAACGCCGUCGUUucgu uccgacg cau       gcg           c
         |||||          ||||||     ||||||||||||||||||||| ||||||| |||       |||           c
         gccgu          uggauu     gggacuUGUGGUGGCAAAGCG AGGCUgc gug       ugc           u
ccauuuuag     ----------      uuuua                     U       -   cacacuc   cuaucuaccau 

Annotation confidence Not enough data

Genome context

chr1: 28889375-28889532 [+]

Mature ath-miR4228-5p

• Accession: MIMAT0017944
• Description: Arabidopsis thaliana ath-miR4228-5p mature miRNA
• Sequence: 21 - AUAGCCUUGAACGCCGUCGUU - 41
• Evidence: experimental ; SOLiD [1]

Mature ath-miR4228-3p

• Accession: MIMAT0032109
• Description: Arabidopsis thaliana ath-miR4228-3p mature miRNA
• Sequence: 107 - UCGGAUGCGAAACGGUGGUGU - 127
• Evidence: not_experimental

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103