Accession
MI0014548
Description
Arabidopsis lyrata
aly-MIR169d precursor miRNA
Sequence
32
reads,
1116
reads per million, 1 experiments
guaucuuugagucuuacauggaaaaaauagagaaugagauUGAGCCAAGGAUGACUUGCCGauuuuuaucaacaaaucuuaacugauuauggugcccgGCAAGUUGACCUUGGCUCUGUuuccuucucuucuuuucgaugucaaacucuagauau
((((((..((((...((((.(((((...((((((.(((((.(((((((((..(((((((((.....(((((...((((......)))).)))))..)))))))))..))))))))).))))).))))))..))))).))))...)))).))))))
((((((..((((...((((.(((((...((((((.(((((.(((((((((..(((((((((.....(((((...((((......)))).)))))..)))))))))..))))))))).))))).))))))..))))).))))...)))).))))))
Structure
uu cuu g aau u U AU auuuu aca uu
guaucu gagu acau gaaaa agagaa gagau GAGCCAAGG GACUUGCCG uauca aauc a
|||||| |||| |||| ||||| |||||| ||||| ||||||||| ||||||||| ||||| ||||
uauaga cuca ugua cuuuu ucucuu cuuUG CUCGGUUCC UUGAACGgc guggu uuag a
-u aac g -cu c U AG ---cc --a uc
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348713.1: 28725944-28726098 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR169d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR169d-5p
| Accession | MIMAT0017491 |
| Description | Arabidopsis lyrata aly-miR169d-5p mature miRNA |
| Sequence | 41 - UGAGCCAAGGAUGACUUGCCG - 61 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
Mature aly-miR169d-3p
| Accession | MIMAT0017492 |
| Description | Arabidopsis lyrata aly-miR169d-3p mature miRNA |
| Sequence | 99 - GCAAGUUGACCUUGGCUCUGU - 119 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
References
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