Stem-loop ath-MIR4221

Accession

MI0015815

Description

Arabidopsis thaliana ath-MIR4221 precursor miRNA

Sequence

uaguauauccguuucacaguUUUUCCUCUGUUGAAUUCUUGCacuagcuuucauaugggccauauuaaguuacaugugggugggugccguaacagugcagcaaccauucugcuagcuugugcaagaguuuaaaaguggugaaacuuu
.................((((((.((.((.((((((((((((((.((((..((.((((.((((((........))))))...(.((((......).))).)..))))..))..)))).)))))))))))))).)).)).))))))..

Structure

uaguauauccguuucac      U  U  G              u    uu  -u    -----------------------g      uaa 
                 aguUUU CC CU UUGAAUUCUUGCac agcu  ca  augg                        ccauau   g
                 |||||| || || |||||||||||||| ||||  ||  ||||                        ||||||    
                 ucaaag gg ga aauuugagaacgug ucga  gu  uacc                        ggugua   u
---------------uu      u  u  a              u    uc  cu    aacgacgugacaaugccgugggug      cau 

Annotation confidence Not enough data

Genome context

chr4: 8460516-8460662 [+]

Mature ath-miR4221

• Accession: MIMAT0017942
• Description: Arabidopsis thaliana ath-miR4221 mature miRNA
• Sequence: 21 - UUUUCCUCUGUUGAAUUCUUGC - 42
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103