Stem-loop aly-MIR851

Accession

MI0014646

Description

Arabidopsis lyrata aly-MIR851 precursor miRNA

Sequence

agggacugUGGUCUUUGUUUGCGACCCAUACGuaaucuuuugugagagacuacgUGUGGGUGGCAAACAAAGACGACAaucccu
(((((.(((.((((((((((((.(((((((((((.(((((....))))).))))))))))).)))))))))))).))).)))))

Structure

     c   G            G           a     u 
aggga ugU GUCUUUGUUUGC ACCCAUACGua ucuuu g
||||| ||| |||||||||||| ||||||||||| |||||  
ucccu ACA CAGAAACAAACG UGGGUGUgcau agaga u
     a   G            G           c     g 

Annotation confidence Low

Genome context

GL348717.1: 16404386-16404469 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR851

Mature aly-miR851-5p

• Accession: MIMAT0017691
• Description: Arabidopsis lyrata aly-miR851-5p mature miRNA
• Sequence: 9 - UGGUCUUUGUUUGCGACCCAUACG - 32
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR851-3p

• Accession: MIMAT0017692
• Description: Arabidopsis lyrata aly-miR851-3p mature miRNA
• Sequence: 55 - UGUGGGUGGCAAACAAAGACGACA - 78
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103