Stem-loop aly-MIR4233

Accession

MI0015795

Description

Arabidopsis lyrata aly-MIR4233 precursor miRNA

Sequence

gacaaauguaagauauuuggaguugaugugggugauugguauguggugcugaacaauuggauccauggcuauauggauuauuuaccguaauaaaguguaaucuguaauguuuaacaucacauaCACAUCAUCAACAUCAACUCCaaaucuuuuguuuguccuuu
((((((((.(((((..(((((((((((((.((((((..((((((((((.((((((....((((((((....))))))))..(((((........).)))).......)))))).))))))))))..)))))).)))))))))))))))))).))))))))....

Structure

----        u     au             g      ug          c      ------------------------auug        g 
    gacaaaug aagau  uuggaguugaugu ggugau  guauguggug ugaaca                            gauccaug c
    |||||||| |||||  ||||||||||||| ||||||  |||||||||| ||||||                            ||||||||  
    cuguuugu uucua  aaCCUCAACUACA CUACUA  Cauacacuac auuugu                            uuagguau u
uuuc        u     --             A      CA          a      aaugucuaaugugaaauaaugccauuua        a 

Annotation confidence Not enough data

Genome context

GL348718.1: 12714347-12714510 [+]

Mature aly-miR4233

• Accession: MIMAT0017922
• Description: Arabidopsis lyrata aly-miR4233 mature miRNA
• Sequence: 124 - CACAUCAUCAACAUCAACUCC - 144
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103