Stem-loop aly-MIR838

Accession

MI0014612

Description

Arabidopsis lyrata aly-MIR838 precursor miRNA

Sequence

2 reads, 70 reads per million, 1 experiments

gaggacuuccauggccucaauccaccuccgguguugUGCAAGAAUGAGAAGCAAAGCcugucuauguauugugagauaucuacuucuaugacuaggauauauguacaagaccggcUUUUCUUCUUCUUCUUGCACAaccugagguaauuggggcuauacaagucuuc
((((((((..(((((((((((..(((((.((.((((((((((((.((((((.((((((.((((.(((((......((((((.............))))))..))))))))).)))))).)))))).))))))))))))))))))).)))))))))))..))))))))

Structure

        cc           cc     c  u            U      C      u    a     ugugag      acuuc 
gaggacuu  auggccucaau  accuc gg guugUGCAAGAA GAGAAG AAAGCc gucu uguau      auaucu     u
||||||||  |||||||||||  ||||| || |||||||||||| |||||| |||||| |||| |||||      ||||||     a
cuucugaa  uaucgggguua  uggag uc caACACGUUCUU UUCUUC UUUcgg caga acaug      uauagg     u
        ca           -a     -  -            C      U      c    -     ----ua      aucag 

Annotation confidence Not enough data

Genome context

GL348713.1: 513681-513847 [-]

Mature aly-miR838-5p

• Accession: MIMAT0017621
• Description: Arabidopsis lyrata aly-miR838-5p mature miRNA
• Sequence: 37 - UGCAAGAAUGAGAAGCAAAGC - 57
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR838-3p

• Accession: MIMAT0017622
• Description: Arabidopsis lyrata aly-miR838-3p mature miRNA
• Sequence: 116 - UUUUCUUCUUCUUCUUGCACA - 136
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103